Association between TP53 codon 72 G>C Polymorphism and Thyroid Carcinoma Risk: An Up-to-Date Meta-Analysis

  1. Jamal Jafari Nedooshan ,
  2. Mohammad Forat Yazdi ,
  3. Hossein Neamatzadeh ,
  4. Masoud Zare Shehneh ,
  5. Saeed Kargar ,
  6. Niloofar Seddighi

Vol 1 No 4 (2016)

DOI 10.31557/apjcb.2016.1.4.89-95

Abstract

Objective: Many published data on the association between p53 codon 72 G>C polymorphism and thyroid carcinoma risk showed inconclusive results. The aim this study was to assess the association between p53 codon 72 G>C polymorphism and thyroid cancer risk.
Methods: A literature search of PubMed, EMBASE, Google scholar and Web of Science databases for case–control studies examining the association between p53 codon 72 G>C polymorphism and thyroid cancer susceptibility up October 2016 was performed. Odds ratios (OR) with 95 % confidence intervals (95 % CI) were used to assess the strength of the association.
Results: A total of 12 case–control studies involving 2,062 thyroid cancer patients and 3,027 controls were included. There was a significant association between the p53 codon 72 G>C polymorphism and thyroid cancer susceptibility in the overall populations under homozygote (CC vs. GG: OR = 1.18, 95% CI 1.12-3.05, P = 0.01) and recessive model (CC vs. GC+GG: OR = 1.73, 95% CI 1.16-2.59, P = 0.007). Subgroup analysis by ethnicity showed that there was no significant association between p53 codon 72 G>C polymorphism and thyroid cancer risk in Caucasians, Asians and mixed Brazilian. No significant publication bias was observed by using Begg’s funnel plot and Egger’s test.
Conclusion: Present meta-analysis indicated that the p53 codon 72 G>C polymorphism may be associated with thyroid cancer risk. However, more studies with large sample size are needed to further assess the associations.

Introduction

Thyroid cancer is the most common endocrine cancer and its incidence has continuously increased in the last three decades all over the world [1]. According to the Surveillance, Epidemiology and End Results programme, thyroid cancer incidence increased 2.4-fold from 1973 to 2002 in the USA [2]. It is estimated that 62,450 new cases of thyroid cancer will occur in the USA in 2015, and 52,900 new cases of thyroid cancer developed In Europe in 2012 [3, 4].

Currently, the etiology of thyroid cancer is not well understood, and exposure to radiation is the only well-known risk factor for thyroid cancer [5]. However, it is well-known that thyroid cancer is a typical human cancer in which critical genes are frequently mutated. In recent years, much attention has been focused on the p53 codon 72 Arg/Pro polymorphism with a base substitute of G to C (Arg and Pro) [6]. The p53 tumor suppressor gene is located at human chromosome 17p13 and encoding a 53-kDa nuclear phosphoprotein which plays an important role in cell cycle regulation, maintenance of genomic integrity, apoptosis, and challenge of environmental insults [7, 8]. Growing evidence indicates that the P53 codon 72 polymorphism can modify risk of certain cancers such as prostate cancer, lung cancer, bladder cancer, head and neck cancer, cervix cancer, and non-melanoma skin cancer [9].

During the last decade, various individual studies have been carried out to examine the association between p53 Arg72Pro polymorphism and thyroid cancer risk, but the results from these studies were controversial. Meta-analysis is a powerful way to identify the association of genetic polymorphisms with cancer risk. Therefore, the current meta-analysis was conducted to clarify whether there is an association between p53 Arg72Pro polymorphism and thyroid cancer risk.

Materials and Methods

Publication search

The relevant case–control studies on the association between p53 codon 72 polymorphism and thyrod cancer risk published before October 1, 2016 were identified by searching databases of PubMed, EMBASE, Web of Science and Google Scholar. The extracted publications were limited to English language and conducted on human subjects. The search keywords used were as follows: “p53 gene,” “TP53,” “Arg72Pro,” “Codon 72,” “polymorphism,” “thyroid neoplasm,” “thyroid cancer,” and “thyroid carcinoma”. We evaluated all the retrieved studies by reading the title and abstract. Any article matching the keywords was retrieved without any restriction. Reference lists of the retrieved articles were also screened for original papers.

Inclusion and exclusion criteria

The following inclusion criteria were used to select eligible studies for the meta-analysis: (1) with case-control or cohort design; (2) studies assessing the association between p53 Arg72Pro polymorphism and thyroid cancer risk; (3) presented genotype frequency of GG, GC, and CC in both cases and controls. Review articles, case reports, letters, reviews, and those without definite information of genotypes were excluded.

Data extraction

Two investigators independently conducted the search for qualified publications according to the study criteria and extracted the required data from the eligible publications. The extracted data included first authors, year of publication, country of origin, ethnicity, total number of cases and controls, cancer type, and allele and genotype frequency in cases and controls. The disagreements were resolved by discussion and consulting a third senior author.

Statistical Analyses

To estimate the risk of thyroid cancer [odds ratio (OR) and 95 % confidence interval (CI)], we recorded genotype frequency from each study. The effects of G vs. C (allele model), CC vs. GG (homozygote genotypes), GC vs. GG (heterozygote genotypes), CC+GC vs. GG (dominant model), and CC vs. GC+GG (recessive model) were evaluated for all studies. A subgroup analysis was conducted to evaluate the effect of p53 codon 72 polymorphism on the susceptibility to thyroid cancer in different populations (Asian, Caucasian, and Brazilian Mixed). Heterogeneity between studies was performed by Q statistic and I2 test. A p value less than 0.1 indicated the presence of heterogeneity . The pooled ORs were calculated with the fixed-effects model based on Mantel–Haenszel method when no significant between study heterogeneity was indicated; the random effects model using DerSimonian–Laird method was employed when obvious heterogeneity was present . Hardy–Weinberg equilibrium (HWE) in controls of each study was checked by a chi-square test for goodness of fit. Potential publication bias was estimated by using Begg’s funnel plots and Egger’s test. Egger’s test p value of < 0.05 was considered to be statistically significant . All the statistical analyses were performed by comprehensive meta-analysis (CMA) V2.0 software (Biostat, USA). All tests were two-sided, and the P values of < 0.05 were considered statistically significant.

Results

Characteristics of Included Studies

Study characteristic

In total, 21 studies relevant to the role of p53 codon 72 polymorphism on thyroid cancer susceptibility were identified through the literature search and selection according to the inclusion criteria. Of these, 9 papers were excluded because of obvious irrelevance by reading the titles and abstracts. Finally, a total of 12 case-control studies with a total of 2062 cases and 3927 controls were included in the meta-analysis. The characteristics of included studies were summarized in Table 1 (Fig. 3)

Figure 3 (Table 1): Characteristics of Studies Included in this Meta-Analysis

a) DTC differentiated thyroid cancer, PTC papillary thyroid carcinoma, MTC medullary thyroid carcinoma, FTC follicular thyroid carcinoma, PHWE P value for Hardy–Weinberg equilibrium.

All the eligible studies were written in English. The populations came from different countries, including China, India, Iran, Brazil, Russia, Kingdom of Saudi Arabia (KSA), turkey, and Germany. There were 4 studies of Caucasian descendants [13, 14, 15, 16], 4 studies of Asian descendants [17, 18, 19, 20] and 4 studies were conducted Brazilian mixed ethnic In addition, the distribution of genotypes in the controls was consistent with HWE in all studies, except three studies (P<0.05) [18, 21, 24].

Meta-analysis results

Our results showed that the p53 codon 72 polymorphism was associated with thyroid cancer risk in the overall populations only under homozygote (CC vs. GG: OR = 1.18, 95% CI 1.12-3.05, P = 0.01) and recessive genetic model (CC vs. GC+GG: OR = 1.73, 95% CI 1.16-2.59, P = 0.007) (Table 2) and ( Fig. 1).

Figure 1 :Forest Plots (Random Effect) Showed Significant Association between P53 Codon 72 G>C Polymorphism and Thyroid Cancer Risk. A: G vs. C, B: CC vs. GG, C: GC vs. GG, D: CC+GC vs. GG and E: CC vs. GC+GG. Results of individual and summary OR estimates and 95% CI of each study were shown. Horizontal lines represented 95% CI, and dotted vertical lines represent the value of the summary OR.

Stratified analysis by ethnicity and histological type

The stratified analyses in Asians, Caucasians and mixed were carried out according to the ethnicity of individual case–control studies. The pooled ORs indicated that the P53 codon 72 variant genotypes were not significantly associated with the development of thyroids in Asians (G vs. C: OR = 0.79, 95% CI 0.55-1.14, P = 0.21, GC vs. GG: OR = 1.18, 95% CI 0.98-1.42, P = 0.06, CC vs. GG: OR = 1.52, 95% CI 0.80-2.88, P = 0.19, CC+GC vs. GG: OR = 1.26, 95% CI 0.87-1.83, P = 0.21, CC vs. GC+GG: OR = 1.46, 95% CI 0.87-2.46, P = 0.15), Caucasians (G vs. C: OR = 0.91, 95% CI 0.51-1.64, P = 0.77, GC vs. GG: OR = 0.84, 95% CI 0.48-1.45, P = 0.53, CC vs. GG: OR = 1.79, 95% CI 0.67-4.77, P = 0.24, CC+GC vs. GG: OR = 0.93, 95% CI 0.49-1.76, P = 0.82, CC vs. GC+GG: OR = 1.86, 95% CI 0.72-4.84, P = 0.19) and mixed (G vs. C: OR = 0.81, 95% CI 0.45-1.45, P = 0.48, GC vs. GG: OR = 0.88, 95% CI 0.48-1.62, P = 0.69, CC vs. GG: OR = 2.42, 95% CI 0.66-8.78, P = 0.17, CC+GC vs. GG: OR = 0.87, 95% CI 0.51-1.47, P = 0.61 , CC vs. GC+GG: OR = 2.11, 95% CI 0.84-5.30, P = 0.11) (Table 2). In addition, subgroup analysis by histological type (PTC, DTC, MTC, FTC) showed that TP53 Arg72Pro polymorphism was not associated with risks of different types of thyroid carcinoma (Data not shown).

Heterogeneity and sensitivity analyses

Moderate heterogeneity across the studies of the p53 Arg72Pro polymorphism was found in this meta-analysis (P =0.094, allele C vs. allele G; P=0.082, GC vs. GG). We assessed the source of the heterogeneity by subgroup analyses based on ethnicity and source of control and found that Parhar et al. was the main contributor to the obvious heterogeneity. When this comparison was removed, there was a substantial increase in homogeneity across the studies (P=0.609; P = 0.548, respectively). Subsequent sensitivity analysis was conducted to check the influence of each study on the pooled ORs by omitting each study, one at a time. The sensitivity analysis indicated that no single study influenced the pooled ORs qualitatively (data not shown), suggesting the stability of our overall results.

Sensitivity analysis

Sensitivity analysis was performed to assess the impact of individual studies on the pooled ORs. The results revealed that no single study affected the summary ORs significantly (data not shown), suggesting the reliability of the results in our meta-analysis.

Evaluation of heterogeneity

In order to test the heterogeneity among the studies, Q test and I2 statistics were employed. Heterogeneity was observed in all the studied genetic models. Thus, random effect model was used to synthesize the data (Tabl. 2).

Table 2.

Results of Meta-Analysis for P53 Codon 72 Polymorphism and Thyroid Cancer Risk.

Genetic model Type of model Heterogeneity Odds ratio
I 2 (%) P H OR 95% CI P OR
Overall G vs. C Randomized 86 ≤0.001 0.83 0.64-1.08 0.16
GC vs. GG Randomized 68 ≤0.001 0.93 0.71-1.22 0.62
CC vs. GG Randomized 81 ≤0.001 1.85 1.12-3.05 0.01
CC+GC vs. GG Randomized 77 ≤0.001 0.99 0.74-1.32 0.97
CC vs. GC+GG Randomized 77 ≤0.001 1.73 1.16-2.59 0.007
Ethnicity G vs. C Randomized 86 ≤0.001 0.91 0.51-1.64 0.77
Caucasian GC vs. GG Randomized 73 0.004 0.84 0.48-1.45 0.53
CC vs. GG Randomized 74 0.002 1.79 0.67-4.77 0.24
CC+GC vs. GG Randomized 80 ≤0.001 0.93 0.49-1.76 0.82
CC vs. GC+GG Randomized 74 0.001 1.86 0.72-4.84 0.19
Asian G vs. C Randomized 83 ≤0.001 0.79 0.55-1.14 0.21
GC vs. GG Fixed 0.0 0.47 1.18 0.98-1.42 0.06
CC vs. GG Randomized 80 0.002 1.52 0.80-2.88 0.19
CC+GC vs. GG Randomized 65 0.03 1.26 0.87-1.83 0.21
CC vs. GC+GG Randomized 76 0.006 1.46 0.87-2.46 0.15
Brazilian Mixed
G vs. C Randomized 90 ≤0.001 0.81 0.45-1.45 0.48
GC vs. GG Randomized 74 0.001 0.88 0.48-1.62 0.69
CC vs. GG Randomized 88 ≤0.001 2.42 0.66-8.78 0.17
CC+GC vs. GG Randomized 75 ≤0.001 0.87 0.51-1.47 0.61
CC vs. GC+GG Randomized 83 ≤0.001 2.11 0.84-5.30 0.11

Publication bias

Publication bias was determined by performing Egger’s test and Begg’s test. The symmetrical funnel plot suggested that there existed no obvious publication bias, which was further confirmed in the Egger's test (CC+GC vs. GG: Begg's test: P =0.387; Egger's test: P =0.278, CC vs. GC+GG: Begg's test: P =0.773; Egger's test: P =0.790 (Fig. 2).

Figure 2 :Funnel Plot Analysis For Publication Bias In The Studies Of The Meta Analysis On The Association Between P53 Codon 72 Polymorphism And Thyroid Cancer Risk (A: CC+GC vs. GG, Begg's test: P =0.387; B: CC vs. GC+GG, Begg's test: P =0.773).

Discussion

The p53 protein is a very important part of genome integrity, and the joint effects of p53 and other proteins can promote the cell cycle. Since the dysfunction of cell cycle can result in the development of cancer, genetic mutations in the p53 gene are suggested to alter host’s susceptibility to thyroid cancer [25]. There are several common single nucleotide polymorphisms in the p53 gene, and P53 codon 11, 47, 72, and 248 polymorphisms are the three most studied ones [26]. p53 codon 72 polymorphism is a G to C substitution at exon 6, which further results in an amino acid change from Arg to Pro [27].

To get a more precise assessment of the association between p53 codon 72 G>C polymorphism and thyroid cancer risk, we performed the present meta-analysis. Twelve studies with a total of 2062 cases and 3927 controls were finally included into the met analysis. Overall, there was obvious association between p53 codon 72 G>C polymorphism and thyroid cancer risk under homozygote (CC vs. GG: OR = 1.18, 95% CI 1.12-3.05, P = 0.01) and recessive model (CC vs. GC+GG: OR = 1.73, 95% CI 1.16-2.59, P = 0.007) (Table 1). Subgroup analysis according to ethnicity detected no significant association in Asians, Caucasians and mixed Brazilian. Thus, the meta-analysis suggests that there is no obvious association between XRCC1 Arg194Trp polymorphism and prostate cancer risk.

In the present meta-analysis, we only assessed the association between p53 codon 72 G>C polymorphism and thyroid cancer risk and there was a significant association between p53 codon 72 G>C polymorphism and thyroid cancer. However, the associations of other p53 polymorphisms with thyroid cancer risk are not assessed in the present meta-analysis, and those associations need further studies.

Obviously, there were moderate to high level heterogeneity. From the subgroups analysis, we found that ethnicity might not be the source of heterogeneity (Table 2). When we deleted the study which was not according to HWE any more, the heterogeneity of all genetic models was not decreased and the results of all five genetic models were not affected. This further indicated that deviations in HWE might not be one source of heterogeneity.

There were some limitations of our meta-analysis. Firstly, there were only 12 studies with a total of 2,062 subjects that were finally included into the meta-analysis. The limited number of studies may increase the risk of bias in the meta-analysis, especially in the subgroup analysis by race. Thus, more studies with large samples are needed. Secondly, the eligibility criteria for inclusion of cases and controls were different between the included studies. The controls in most studies were selected from non-cancer individuals, while the controls in other studies were from healthy individuals. Third, due to the unavailability of other detailed information, we have not conduct stratified analysis based on some factors such as gender and age which may influence the results. Finally, in the current meta-analysis we have focused only on the one single SNP on thyroid cancer risk rather than combined effects of p53 other well-known polymorphisms, which could help to improve a precise estimation of the roles of p53 polymorphism in the development of thyroid cancer. Therefore, studies with good design are needed in the future, and ORs adjusted for other confounding factors need reporting.

In summary, current meta-analysis results indicated that the p53 codon 72 G>C polymorphism may be associated with thyroid cancer risk. However, more studies with large sample size are needed to further assess the associations.

Acknowledgments

Our sincere thanks to Dr. Mohammad Hasan Sheikhha who provided advise on the statistical methods used within this paper.

Funding No specific funding was obtained to support the conduct of this study.

Compliance with ethical standards

Conflict of Interest the authors declare that they have no conflict of interest.

Ethical approval this article does not contain any studies with human participants or animals performed by any of the authors.

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Author Details

Jamal Jafari Nedooshan
Department of General Surgery, Shahid Sadoughi University of Medical Sciences, Yazd, Iran.

Mohammad Forat Yazdi
Affiliation not stated
mohammad.foratyazdi@gmail.com

Hossein Neamatzadeh
Mother and Newborn Health Research Center, Shahid Sadoughi University of Medical Sciences, Yazd, Iran.

Masoud Zare Shehneh
Department of Medical Genetics, International Campus, Shahid Sadoughi University of Medical Sciences, Yazd, Iran.

Saeed Kargar
Department of General Surgery, Shahid Sadoughi University of Medical Sciences, Yazd, Iran.

Niloofar Seddighi
Shahid Sadoughi Hospital, Shahid Sadoughi University of Medical Sciences, Yazd, Iran.

How to Cite

1.
Jafari Nedooshan J, Yazdi MF, Neamatzadeh H, Zare Shehneh M, Kargar S, Seddighi N. Association between TP53 codon 72 G&gt;C Polymorphism and Thyroid Carcinoma Risk: An Up-to-Date Meta-Analysis. apjcb [Internet]. 25Dec.2016 [cited 14Oct.2019];1(4):89-5. Available from: http://waocp.com/journal/index.php/apjcb/article/view/205

 


 


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